DAY 1 - Monday 30 May 2016

Chair: Tamas Korcsmaros - Holger Dinkel

Time Activity Responsible
09:00–10:30 Introduction to Linux command-line (I) Allegra Via
10:30–11:00 Coffee break  
11:00–12:30 Introduction to Linux command-line (II) Allegra Via
12:30–14:00 Lunch + Introduction round i.e. speed networking  
14:00–15:30 Introduction to PPI networks Tamas Korcsmaros
15:30–16:00 Coffee break  
16:00–17:00 Plenary: Medical informatics Lars Juhl Jensen
17:00–17:30 Coffee break  
17:30–19:00 Protein association networks with STRING Lars Juhl Jensen
19:30– Dinner on the boat  

DAY 2 - Tuesday 31 May 2016

Chair: Allegra Via - Miguel Andrade

Time Activity Responsible
09.00–10.30 Network visualization with Cytoscape (I) Scooter Morris & Nadya Doncheva
10.30–11.00 Coffee break  
11.00–12.30 Network visualization with Cytoscape (II) Scooter Morris & Nadya Doncheva
12.30–14.00 Lunch and first poster session  
14.00–15.30 Chimera protein structure (I) Scooter Morris
15.30–16.00 Coffee break  
16.00–17.00 Plenary: SMS in protein communication: How Short Motif Sequences are read and understood Ora Schueler-Furman
17.00–17.30 Coffee break  
17.30–19.00 Working with your own data  
19.00– Unseminar Aidan Budd and Holger Dinkel

DAY 3 - Wednesday 01 June 2016

Chair: Marco Punta - Scooter Morris

Time Activity Responsible
09.00–10.30 Structure and interfaces of PPIs Allegra Via
10.30–11.00 Coffee break  
11.00–12.30 Peptide and protein docking (I) Ora Schueler-Furman
12.30–14.00 Lunch and second poster session  
14.00–15.30 Peptide and protein docking (II) Nawsad Alam & Ora Schueler-Furman
15.30–16.00 Coffee break  
16.00–17.00 Plenary: Modular Protein Architecture and the Construction of Cell Regulatory Systems Toby Gibson
17.00–17.30 Coffee break  
17.30–19.00 Working with your own data  

DAY 4 - Thursday 02 June 2016

Chair: Lars Juhl Jensen - Nadya Doncheva

Time Activity Responsible
09.00–10.30 Multiple sequence alignments and Jalview Toby Gibson and Aidan Budd
10.30–11.00 Coffee break  
11.00–12.30 Protein families and domains and annotation transfer (I) Marco Punta
12.30–13.30 Lunch  
13.30–15.00 Protein families and domains and annotation transfer (II) Marco Punta
13.00–15.45 Parallel: EMBL meeting  
15.00–15.30 Coffee break  
15.30–16.45 Protein feature prediction and homology modelling Miguel Andrade
17.00– Excursion  

DAY 5 - Friday 03 June 2016

Chair: Tamas Korcsmaros - Natasha Wood

Time Activity Responsible
09.00–10.30 Repeats and low complexity regions Miguel Andrade
10.30–11.00 Coffee break  
11.00–12.30 Intrinsically disordered proteins Zsuzsa Dosztanyi
12.30–13.30 Lunch  
13.30–15.00 Linear Motif Biology (I) Holger Dinkel & Toby Gibson
15.00–15.30 Coffee break  
15.30–17.00 Linear Motif Biology (II) Holger Dinkel & Toby Gibson
17.00–17.30 Coffee break  
17.30–19.00 Working with own data  
  OR  
  Automated access of online tools using REST interfaces Holger Dinkel

DAY 6 - Saturday 04 June 2016

Chair: Toby Gibson - Zsuzsanna Dosztanyi

Time Activity Responsible
09.00–10.30 Molecular dynamics to study PPIs Natasha Wood
10.30–11.00 Coffee break  
11.00–12.30 Network visualization with Cytoscape combined session Scooter Morris, Nadya Doncheva & Lars Juhl Jensen
12.30–13.30 Lunch  
13.30–15.00 Working with own data  
15.00–15.30 Coffee break  
15.30–17.00 Pulling all together - Summary Tamas Korcsmaros
17.00– Closing