EMBO Budapest
  • Course Program
  • Introduction to Linux command-line
  • Introduction to PPI networks
  • STRING
  • Network visualization with Cytoscape
  • Chimera
  • Unseminar
  • Structure and interfaces of PPIs
  • Peptide and protein docking
  • MSA & Jalview
  • Protein Families
  • Protein Feature Prediction
  • Repeats and low complexity regions
  • Intrinsically disordered proteins
  • Short Linear Motifs
  • REST services
  • Molecular dynamics
  • Combined Cytoscape Session

Protein Feature Prediction

by Miguel Andrade

Structure modeling by homology

Links:

  • Aquaria
  • Q9HD67 in Aquaria
  • PolyPhen2

Secondary structure

Files for practical part:

  • MR1_fasta.txt
  • glul_fasta.txt
  • glul_aln.txt

Links:

  • Jalview
  • NCBI Gene
  • JPred4

Presentations:

  • lesson_1_model3D_4.pptx
  • lesson_2_pred2D_4.pptx
  • lesson_3_predTM_3.pptx

EMBO Budapest

Contact:
  • Tamás Szaniszló embo2016bp@ttk.elte.hu

Program and material for the EMBO Practical Course on computational analysis of protein-protein interactions: Sequences, networks and diseases", Budapest, Hungary, 30th May - 4th June 2016

Sponsors:

With assistance from: