EMBO Budapest
  • Course Program
  • Introduction to Linux command-line
  • Introduction to PPI networks
  • STRING
  • Network visualization with Cytoscape
  • Chimera
  • Unseminar
  • Structure and interfaces of PPIs
  • Peptide and protein docking
  • MSA & Jalview
  • Protein Families
  • Protein Feature Prediction
  • Repeats and low complexity regions
  • Intrinsically disordered proteins
  • Short Linear Motifs
  • REST services
  • Molecular dynamics
  • Combined Cytoscape Session

Repeats and low complexity regions

by Miguel Andrade

Protein feature prediction

Files for practical part:

  • littleMSA_fasta.txt
  • ferredoxins2_fasta.txt

Links:

  • Q28WW9
  • Q28WW9.fasta
  • TMHMM

Composition bias and repeats

Files for practical part:

  • MR1_fasta.txt
  • littleMSA_fasta.txt

Links:

  • dotlet
  • biasviz

polyQ

Links:

  • FastaHerder2

Presentations:

  • lesson_4_bias_6.pptx
  • lesson_5_polyQ_3.pptx

EMBO Budapest

Contact:
  • Tamás Szaniszló embo2016bp@ttk.elte.hu

Program and material for the EMBO Practical Course on computational analysis of protein-protein interactions: Sequences, networks and diseases", Budapest, Hungary, 30th May - 4th June 2016

Sponsors:

With assistance from: