Molecular dynamics
Links
Presentations:
Software:
Tutorials:
- NAMD/VMD Tutorial
- Chimera MD Tutorial
- Chimera Collagen Tutorial
- Chimera commands for Making Animations I
- Chimera commands for Making Animations II (older, use with caution)
- Amber Tutorial
- Bio3D Tutorial
Chimera command line to animate your protein:
movie record ; turn y 3 120 ; wait 120 ; movie stop ; movie encode output ~/Desktop/turn.mov bitrate 10000
movie record ; rock y 4 68 ; wait ; rock x 4 68 ; wait ; movie stop ; movie encode output ~/Desktop/rock.mov