EMBO Budapest
  • Course Program
  • Introduction to Linux command-line
  • Introduction to PPI networks
  • STRING
  • Network visualization with Cytoscape
  • Chimera
  • Unseminar
  • Structure and interfaces of PPIs
  • Peptide and protein docking
  • MSA & Jalview
  • Protein Families
  • Protein Feature Prediction
  • Repeats and low complexity regions
  • Intrinsically disordered proteins
  • Short Linear Motifs
  • REST services
  • Molecular dynamics
  • Combined Cytoscape Session

Protein Families

by Marco Punta

Slides

  • Lecture
  • Exercises

Exercise 1

  • 3m71.pdb
  • 3m71_del.pdb
  • PF03595_seed_mod.txt.aln

Exercise 2

  • P29973.fasta
  • mistery-protein.fasta

Exercise 3

  • file.pdb
  • family-building-excercise.fasta
  • hmmer-ali.fasta
  • jalview-ali.fasta

EMBO Budapest

Contact:
  • Tamás Szaniszló embo2016bp@ttk.elte.hu

Program and material for the EMBO Practical Course on computational analysis of protein-protein interactions: Sequences, networks and diseases", Budapest, Hungary, 30th May - 4th June 2016

Sponsors:

With assistance from: