Miguel's teaching material

1. Secondary structure prediction

Presentation: PDF, Powerpoint

Exercise files:

• glul_aln.txt
• glul_fasta.txt
• MR1_fasta.txt

2. Structure modeling by homology

Presentation: PDF, Powerpoint

Links:

• Aquaria
• Aquaria with results for Q9HD67
• pph2

3. Protein feature prediction

Presentation: PDF, Powerpoint

Exercise files:

• littleMSA_fasta.txt
• ferredoxins2_fasta.txt

Links:

• Uniprot record for Q28WW9
• Fasta sequnence for Q28WW9
• TMHMM

4. Composition bias and repeats

Presentation: PDF, Powerpoint

Exercise files:

• littleMSA_fasta.txt
• MR1_fasta.txt

Links:

• dotlet
• biasviz