DAY 1 - Monday 28 September 2015

Time Activity Responsible Location
08:15 Coach departs hotel to TGAC   Hotel car park
08:30-09:00 Registration and Coffee   TGAC Atrium
09:00-09:15 Welcome and introductions Matt Drew Darwin - Training Room
09:15-10:30 1 to 1 introductions round Aidan Budd Darwin - Training Room
10:30-11:00 Coffee Break   TGAC Atrium
11:00-12:30 Introduction to Markdown, Pandoc, and Git Holger Dinkel Darwin - Training Room
12:30-13:30 Lunch   TGAC Atrium
13:30-15:00 Introduction to bioinformatics and Introduction to sequence alignments, practical and presentation Aidan Budd Darwin - Training Room
15:00-15:30 Coffee Break   TGAC Atrium
15:30-17:00 Chimera protein structure Scooter Morris Darwin - Training Room
17:00-17:30 Coffee Break   TGAC Atrium
17:30-19:00 Chimera protein structure Scooter Morris Darwin - Training room
19:00 Coach departs TGAC to hotel   Outside TGAC entrance
19:30 Dinner @ Toreros   Meet at hotel lobby

DAY 2 - Tuesday 29 September 2015

Time Activity Responsible Location
08:15 Coach departs hotel to TGAC   Hotel
08:30-09:00 Coffee Break   TGAC Atrium
09:00-10:30 Protein families and domains and annotation transfer by homology Marco Punta Darwin - Training Room
10:30-11:00 Coffee Break   TGAC Atrium
11:00-12:30 Continued: Protein families and domains and annotation transfer by homology Marco Punta Darwin - Training Room
12:30-14:30 Lunch and Poster Session   TGAC Atrium
14:30-16:00 Structure of PPIs and interfaces of PPIs, predicting globular 3D structure Allegra Via Darwin - Training Room
16:00-16:30 Coffee Break   TGAC Atrium
16:30-18:00 Continued: Structure of PPIs and interfaces of PPIs, predicting globular 3D structure Allegra Via Darwin - Training Room
18:00-18:45 Dinner - Pizza   TGAC Atrium
18:45-20:00 Trainee data practical session: working with your own data Vicky & Aidan Darwin - Training Room
20:00 Coach departs TGAC to hotel   Outside TGAC entrance

DAY 3 - Wednesday 30 September 2015

Time Activity Responsible Location
08:15 Coach departs hotel to TGAC   Hotel Car Park
08:30-09:00 Morning Coffee   TGAC Atrium
09:00-10:30 Prediction of protein features (in absence of 3D info) Miguel Andrade Darwin - Training Room
10:30-11:00 Coffee Break   TGAC Atrium
11:00-12:30 Repeats, compositionally biased regions Miguel Andrade Darwin - Training Room
12:30-14:00 Coach leaves for excursion to Sandringham Estate with Lunch   Outside TGAC entrance
14:00-17:00 Tour around Sandringham Estate and Gardens & Free Time    
17:00-18:30 Coach leaves Sandringham Estate to hotel   Sandringham Estate Car Park
19:00 Dinner - Trattoria Rustica   Meet at hotel lobby

DAY 4 - Thursday 1 October 2015

Time Activity Responsible Location
08:15 Coach departs hotel to TGAC   Hotel Car Park
08:30-09:00 Morning Coffee   TGAC Atrium
09:00-10:30 Biology and prediction of intrinsically unstructured peptide regions Zsuzsanna Dosztanyi Darwin - Training Room
10:30-11:00 Coffee Break   TGAC Atrium
11:00-12:30 Continued: Biology and prediction of intrinsically unstructured peptide regions Zsuzsanna Dosztanyi Darwin - Training Room
12:30-14:30 Lunch and Poster Session   TGAC Atrium
14:30-16:00 Linear motif biology and prediction, cooperativity in cellular signalling Holger Dinkel & Toby Gibson Darwin - Training Room
16:00-16:30 Coffee Break   TGAC Atrium
16:30-18:00 Continued: Linear motif biology and prediction, cooperativity in cellular signalling Holger Dinkel & Toby Gibson Darwin - Training Room
18:00-19:00 Dinner - Pizza   TGAC Atrium
19:00-21:00 Bioinformatics unseminar: “Open data, open tools”   Darwin - Training Room
21:00 Coach departs TGAC to hotel   Outside TGAC entrance

DAY 5 - Friday 2 October 2015

Time Activity Responsible Location
08:15 Coach departs hotel to TGAC   Hotel Car Park
08:30-09:00 Morning Coffee   TGAC Atrium
09:00-10:30 Automated access of online tools using REST interfaces Holger Dinkel & Toby Gibson Darwin - Training Room
10:30-11:00 Coffee Break   TGAC Atrium
11:00-12:30 Multiple Sequence Alignments using JalView Holger Dinkel & Toby Gibson Darwin - Training Room
12:30-13:30 Lunch   TGAC Atrium
13:30-15:00 STRING - protein association networks Lars Juhl Jensen Darwin - Training Room
15:00-15:30 Coffee Break   TGAC Atrium
15:30-17:00 Continued: STRING - protein association networks Lars Juhl Jensen Darwin - Training Room
18:00 Coach departs TGAC to hotel   Outside TGAC entrance
19:30 Dinner - Maids Head Hotel   Meet at hotel restaurant

DAY 6 - Saturday 3 October 2015

Time Activity Responsible Location
08:15 Coach departs hotel to TGAC   Hotel Car Park
08:30-09:00 Morning Coffee   TGAC Atrium
09:00-10:30 Exploring PPI networks using Cytoscape Scooter Morris & Nadezhda Doncheva Darwin - Training Room
10:30-11:00 Coffee Break   TGAC Atrium
11:00-12:30 Continued: Exploring PPI networks using Cytoscape Scooter Morris & Nadezhda Doncheva Darwin - Training Room
12:30-13:30 Lunch   TGAC Atrium
13:30-15:00 Continued: Exploring PPI networks using Cytoscape Scooter Morris & Nadezhda Doncheva Darwin - Training Room
15:00-15:30 Coffee Break   TGAC Atrium
15:30-17:00 Pulling it all together - summary and lessons learnt Tamas Korcsmaros Darwin - Training Room
17:00-17:30 Wrap up and Feedback Matt Drew Darwin - Training Room
17:30 Coach departs TGAC to hotel   Outside TGAC entrance
18:00 Dinner - Last Wine Bar   Meet at hotel lobby